Ingenuity Pathways Analysis online training

Please join us on Tuesday May 19 for an online training on the Ingenuity Pathways Analysis (IPA).

Learn how you can leverage Ingenuity IPA’s expert curation of the scientific literature from the past 18+ years and the thousands of hours spent to validate and organize NGS data from sources such as the SRA database, GEO, TCGA and more.  Researchers can easily analyze their own NGS data alongside public datasets and manual curation of literature to identify the best testable hypotheses, targets and biomarkers.

Training Agenda 
Time:                 Tuesday, May 19th, 10am-12:30pm Zoom Web Training
Presenter:        Devendra Mistry, PhD, Field Application Scientist

10-10:15am:    Introduction to IPA Database and Applications Supported
       
10:15-11:00am:   Live demo of IPA Analysis Workflow
• Format, upload your data, and launch an analysis
• Identify pathways associated with your gene/protein/metabolite list
• Find causal regulators and their directional effect on genes functions and diseases

11:30 -1pm:     Advanced IPA Analysis Topics
• Build pathways, make connections between entities, and overlay multiple dataset
• Multi-groups (treatments, time points etc.) and multi-omic comparisons
o How the pathways, biological processes and regulators are regulated across different time points, treatments, disease conditions?
o Generating a list of biomarkers specific to a condition
• How to gain insights from public data using Analysis Match and Activity Plot
o Compare user analysis with analyses of public datasets from GEO, SRA, TCGA etc.
o How is the regulator, pathway, biological function of interest behaving across ~60,000 public dataset analyses

Please follow the link below to register for this training:
https://usc.qualtrics.com/jfe/form/SV_0cZIV5DwfXuaOhf

Let us know if you have any questions.

USC Libraries Bioinformatics Services
https://libraries.usc.edu/bioinformatics
nmlbio@usc.edu